2LLH Dna Binding Protein, Chaperone date Nov 09, 2011
title Nmr Structure Of Npm1_c70
authors L.Banci, I.Bertini, M.Brunori, A.Di Matteo, L.Federici, A.Gallo, C Sterzo, M.Mori
compound source
Molecule: Nucleophosmin
Chain: A
Fragment: Nucleolar Localization Region Residues 225-294
Synonym: Npm, Nucleolar Phosphoprotein B23, Nucleolar Prote Numatrin;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Npm1, Npm
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet28+(A)
methodSolution NMR
Primary referenceStructure of Nucleophosmin DNA-binding Domain and Analysis of Its Complex with a G-quadruplex Sequence from the c-MYC Promoter., Gallo A, Lo Sterzo C, Mori M, Di Matteo A, Bertini I, Banci L, Brunori M, Federici L, J Biol Chem. 2012 Aug 3;287(32):26539-48. Epub 2012 Jun 15. PMID:22707729
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (443 Kb) [Save to disk]
  • Biological Unit Coordinates (2llh.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2LLH
  • Original NMR restraints for 2LLH from PDB
  • Retrieve 2LLH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LLH from S2C, [Save to disk]
  • View 2LLH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LLH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LLH, from MSDmotif at EBI
  • Fold representative 2llh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2llh] [2llh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2LLH with the sequences similar proteins can be viewed for 2LLH's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2LLH
  • Community annotation for 2LLH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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