2LLH Dna Binding Protein, Chaperone date Nov 09, 2011
title Nmr Structure Of Npm1_c70
authors L.Banci, I.Bertini, M.Brunori, A.Di Matteo, L.Federici, A.Gallo, C Sterzo, M.Mori
compound source
Molecule: Nucleophosmin
Chain: A
Fragment: Nucleolar Localization Region Residues 225-294
Synonym: Npm, Nucleolar Phosphoprotein B23, Nucleolar Prote Numatrin;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Npm1, Npm
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet28+(A)
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of Nucleophosmin DNA-binding Domain and Analysis of Its Complex with a G-quadruplex Sequence from the c-MYC Promoter., Gallo A, Lo Sterzo C, Mori M, Di Matteo A, Bertini I, Banci L, Brunori M, Federici L, J Biol Chem. 2012 Aug 3;287(32):26539-48. Epub 2012 Jun 15. PMID:22707729
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (443 Kb) [Save to disk]
  • Biological Unit Coordinates (2llh.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2LLH
  • Original NMR restraints for 2LLH from PDB
  • Retrieve 2LLH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LLH from S2C, [Save to disk]
  • View 2LLH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LLH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LLH, from MSDmotif at EBI
  • Fold representative 2llh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2llh] [2llh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LLH
  • Community annotation for 2LLH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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