2LLM Structure of amyloid precursor protein's transmembrane domain date
authors Nadezhdin, K.D., Bocharova, O.V., Bocharov, E.V., Arseniev, A.S.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and dynamic study of the transmembrane domain of the amyloid precursor protein., Nadezhdin KD, Bocharova OV, Bocharov EV, Arseniev AS, Acta Naturae. 2011 Jan;3(1):69-76. PMID:22649674
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]
  • Biological Unit Coordinates (2llm.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 2LLM
  • Original NMR restraints for 2LLM from PDB
  • Retrieve 2LLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LLM from S2C, [Save to disk]
  • View 2LLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LLM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LLM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2llm_A] [2llm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LLM
  • Community annotation for 2LLM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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