2LLM Protein Fibril date Nov 15, 2011
title Structure Of Amyloid Precursor Protein'S Transmembrane Domai
authors K.D.Nadezhdin, O.V.Bocharova, E.V.Bocharov, A.S.Arseniev
compound source
Molecule: Amyloid Beta A4 Protein
Chain: A
Fragment: Unp Residues 686-726
Synonym: Abpp, Appi, App, Alzheimer Disease Amyloid Protein Vascular Amyloid Peptide, Cvap, Prea4, Protease Nexin-II, P App, Soluble App-Alpha, S-App-Alpha, Soluble App-Beta, S-Ap C99, Beta-Amyloid Protein 42, Beta-App42, Beta-Amyloid Prot Beta-App40, C83, P3(42), P3(40), C80;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: App, A4, Ad1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pgemex-1
methodSolution NMR
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and dynamic study of the transmembrane domain of the amyloid precursor protein., Nadezhdin KD, Bocharova OV, Bocharov EV, Arseniev AS, Acta Naturae. 2011 Jan;3(1):69-76. PMID:22649674
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (2llm.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2LLM
  • Original NMR restraints for 2LLM from PDB
  • Retrieve 2LLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LLM from S2C, [Save to disk]
  • View 2LLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LLM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LLM, from MSDmotif at EBI
  • Fold representative 2llm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2llm_A] [2llm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LLM
  • Community annotation for 2LLM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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