2LLP Structural Protein, Contractile Protein date Nov 15, 2011
title Solution Structure Of A Thp Type 1 Alpha 1 Collagen Fragment
authors I.Bertini, M.Fragai, C.Luchinat, M.Melikian, M.Toccafondi, J.L.La G.B.Fields
compound source
Molecule: Collagen Alpha-1(I) Chain
Chain: A, B, C
Fragment: Unp Residues 949-965
Synonym: Alpha-1 Type I Collagen
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthesis From Fmoc Solid-Phase Chemistry
methodSolution NMR
Primary referenceStructural basis for matrix metalloproteinase 1-catalyzed collagenolysis., Bertini I, Fragai M, Luchinat C, Melikian M, Toccafondi M, Lauer JL, Fields GB, J Am Chem Soc. 2012 Feb 1;134(4):2100-10. Epub 2012 Jan 19. PMID:22239621
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (364 Kb) [Save to disk]
  • Biological Unit Coordinates (2llp.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 2LLP
  • Original NMR restraints for 2LLP from PDB
  • Retrieve 2LLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LLP from S2C, [Save to disk]
  • View 2LLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LLP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LLP, from MSDmotif at EBI
  • Fold representative 2llp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2llp_B] [2llp] [2llp_C] [2llp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2LLP with the sequences similar proteins can be viewed for 2LLP's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2LLP
  • Community annotation for 2LLP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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