2LLY Transport Protein date Nov 18, 2011
title Nmr Structures Of The Transmembrane Domains Of The Nachr A4
authors V.Bondarenko, D.Mowrey, T.Tillman, T.Cui, L.T.Liu, Y.Xu, P.Tang
compound source
Molecule: Neuronal Acetylcholine Receptor Subunit Alpha-4
Chain: A
Fragment: Helical Transmembrane Region, Residues 242-339 An 598-625;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Chrna4, Nacra4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Ptbsg1
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structures of the transmembrane domains of the alpha4beta2 nAChR., Bondarenko V, Mowrey D, Tillman T, Cui T, Liu LT, Xu Y, Tang P, Biochim Biophys Acta. 2012 Feb 14;1818(5):1261-1268. PMID:22361591
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (837 Kb) [Save to disk]
  • Biological Unit Coordinates (2lly.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 2LLY
  • Original NMR restraints for 2LLY from PDB
  • Retrieve 2LLY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LLY from S2C, [Save to disk]
  • View 2LLY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LLY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LLY, from MSDmotif at EBI
  • Fold representative 2lly from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lly] [2lly_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LLY
  • Community annotation for 2LLY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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