2LMN Structural Model for a 40-Residue Beta-Amyloid Fibril with Two-Fold Symmetry, Positive Stagger date
authors Tycko, R., Petkova, A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
note 2LMN (Molecule of the Month:pdb189)
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceMolecular structural basis for polymorphism in Alzheimer's beta-amyloid fibrils., Paravastu AK, Leapman RD, Yau WM, Tycko R, Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18349-54. Epub 2008 Nov 17. PMID:19015532
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (974 Kb) [Save to disk]
  • Biological Unit Coordinates (2lmn.pdb1.gz) 98 Kb
  • CSU: Contacts of Structural Units for 2LMN
  • Original NMR restraints for 2LMN from PDB
  • Retrieve 2LMN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LMN from S2C, [Save to disk]
  • View 2LMN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LMN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LMN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lmn_J] [2lmn_K] [2lmn_E] [2lmn_B] [2lmn_L] [2lmn_C] [2lmn] [2lmn_G] [2lmn_A] [2lmn_H] [2lmn_F] [2lmn_I] [2lmn_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LMN
  • Community annotation for 2LMN at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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