2LMO Protein Fibril date Dec 08, 2011
title Structural Model For A 40-Residue Beta-Amyloid Fibril With T Symmetry, Negative Stagger
authors R.Tycko, A.Petkova
compound source
Molecule: Beta-Amyloid Protein 40
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Beta-App40
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolid-State NMR
Primary referenceExperimental constraints on quaternary structure in Alzheimer's beta-amyloid fibrils., Petkova AT, Yau WM, Tycko R, Biochemistry. 2006 Jan 17;45(2):498-512. PMID:16401079
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (966 Kb) [Save to disk]
  • Biological Unit Coordinates (2lmo.pdb1.gz) 97 Kb
  • CSU: Contacts of Structural Units for 2LMO
  • Original NMR restraints for 2LMO from PDB
  • Retrieve 2LMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LMO from S2C, [Save to disk]
  • View 2LMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LMO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LMO, from MSDmotif at EBI
  • Fold representative 2lmo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lmo_J] [2lmo_I] [2lmo_L] [2lmo_E] [2lmo_F] [2lmo_G] [2lmo_A] [2lmo_K] [2lmo_H] [2lmo_D] [2lmo_B] [2lmo] [2lmo_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LMO
  • Community annotation for 2LMO at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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