2LMO Protein Fibril date Dec 08, 2011
title Structural Model For A 40-Residue Beta-Amyloid Fibril With T Symmetry, Negative Stagger
authors R.Tycko, A.Petkova
compound source
Molecule: Beta-Amyloid Protein 40
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Beta-App40
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolid-State NMR
Primary referenceExperimental constraints on quaternary structure in Alzheimer's beta-amyloid fibrils., Petkova AT, Yau WM, Tycko R, Biochemistry. 2006 Jan 17;45(2):498-512. PMID:16401079
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (966 Kb) [Save to disk]
  • Biological Unit Coordinates (2lmo.pdb1.gz) 97 Kb
  • CSU: Contacts of Structural Units for 2LMO
  • Original NMR restraints for 2LMO from PDB
  • Retrieve 2LMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LMO from S2C, [Save to disk]
    • View 2LMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2LMO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LMO, from MSDmotif at EBI
  • Fold representative 2lmo from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lmo_A] [2lmo_B] [2lmo_C] [2lmo_D] [2lmo_E] [2lmo_F] [2lmo_G] [2lmo_H] [2lmo_I] [2lmo_J] [2lmo_K] [2lmo_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2LMO with the sequences similar proteins can be viewed for 2LMO's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2LMO
  • Community annotation for 2LMO at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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