2LNA Hydrolase date Dec 20, 2011
title Solution Nmr Structure Of The Mitochondrial Inner Membrane D (Residues 164-251), Ftsh_ext, From The Paraplegin-Like Prot From Homo Sapiens, Northeast Structural Genomics Consortium Hr6741a
authors T.A.Ramelot, Y.Yang, H.Lee, H.Janua, E.Kohan, R.Shastry, T.B.Acton J.K.Everett, J.H.Prestegard, G.T.Montelione, M.A.Kennedy, North Structural Genomics Consortium (Nesg), Mitochondrial Protein Partnership (Mpp)
compound source
Molecule: Afg3-Like Protein 2
Chain: A
Fragment: Unp Residues 164-251
Synonym: Paraplegin-Like Protein
Ec: 3.4.24.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Afg3l2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Pmgk
Expression_system_vector: Pet15_nesg
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure and MD simulations of the AAA protease intermembrane space domain indicates peripheral membrane localization within the hexaoligomer., Ramelot TA, Yang Y, Sahu ID, Lee HW, Xiao R, Lorigan GA, Montelione GT, Kennedy MA, FEBS Lett. 2013 Nov 1;587(21):3522-8. doi: 10.1016/j.febslet.2013.09.009. Epub, 2013 Sep 18. PMID:24055473
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (535 Kb) [Save to disk]
  • Biological Unit Coordinates (2lna.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 2LNA
  • Original NMR restraints for 2LNA from PDB
  • Retrieve 2LNA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LNA from S2C, [Save to disk]
  • View 2LNA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LNA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LNA, from MSDmotif at EBI
  • Fold representative 2lna from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lna_A] [2lna]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LNA
  • Community annotation for 2LNA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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