2LOH Neuropeptide date Jan 24, 2012
title Dimeric Structure Of Transmembrane Domain Of Amyloid Precurs In Micellar Environment
authors K.Nadezhdin, E.Bocharov, O.Bocharova, A.Arseniev
compound source
Molecule: P3(42)
Chain: A, B
Fragment: Unp Residues 686-726
Synonym: Amyloid Beta A4 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: App, A4, Ad1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector: Pgemex-1
methodSolution NMR
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Primary referenceDimeric structure of transmembrane domain of amyloid precursor protein in micellar environment., Nadezhdin KD, Bocharova OV, Bocharov EV, Arseniev AS, FEBS Lett. 2012 May 11. PMID:22584060
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (313 Kb) [Save to disk]
  • Biological Unit Coordinates (2loh.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2LOH
  • Original NMR restraints for 2LOH from PDB
  • Retrieve 2LOH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LOH from S2C, [Save to disk]
  • View 2LOH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LOH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LOH, from MSDmotif at EBI
  • Fold representative 2loh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2loh_B] [2loh_A] [2loh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2LOH with the sequences similar proteins can be viewed for 2LOH's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2LOH
  • Community annotation for 2LOH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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