2LOH Neuropeptide date Jan 24, 2012
title Dimeric Structure Of Transmembrane Domain Of Amyloid Precurs In Micellar Environment
authors K.Nadezhdin, E.Bocharov, O.Bocharova, A.Arseniev
compound source
Molecule: P3(42)
Chain: A, B
Fragment: Unp Residues 686-726
Synonym: Amyloid Beta A4 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: App, A4, Ad1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector: Pgemex-1
methodSolution NMR
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDimeric structure of transmembrane domain of amyloid precursor protein in micellar environment., Nadezhdin KD, Bocharova OV, Bocharov EV, Arseniev AS, FEBS Lett. 2012 May 11. PMID:22584060
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (313 Kb) [Save to disk]
  • Biological Unit Coordinates (2loh.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2LOH
  • Original NMR restraints for 2LOH from PDB
  • Retrieve 2LOH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LOH from S2C, [Save to disk]
  • View 2LOH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LOH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LOH, from MSDmotif at EBI
  • Fold representative 2loh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2loh_B] [2loh_A] [2loh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LOH
  • Community annotation for 2LOH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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