2LPZ Transport Protein date Feb 21, 2012
title Atomic Model Of The Type-III Secretion System Needle
authors A.Loquet, N.G.Sgourakis, R.Gupta, K.Giller, D.Riedel, C.Goosmann, C.Griesinger, M.G.Kolbe, D.Baker, S.Becker, A.Lange
compound source
Molecule: Protein Prgi
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, A, B, C;
Engineered: Yes
Organism_scientific: Salmonella Enterica Subsp. Enterica Se Typhimurium;
Organism_taxid: 90371
Gene: Prgi, Stm2873
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21
Expression_system_variant: De3
Expression_system_vector: Pet16b
methodSolid-State NMR
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, Y, E, V, Z, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


a, c, b


Primary referenceAtomic model of the type III secretion system needle., Loquet A, Sgourakis NG, Gupta R, Giller K, Riedel D, Goosmann C, Griesinger C, Kolbe M, Baker D, Becker S, Lange A, Nature. 2012 May 20;486(7402):276-9. doi: 10.1038/nature11079. PMID:22699623
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6097 Kb) [Save to disk]
  • Biological Unit Coordinates (2lpz.pdb1.gz) 612 Kb
  • CSU: Contacts of Structural Units for 2LPZ
  • Original NMR restraints for 2LPZ from PDB
  • Retrieve 2LPZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LPZ from S2C, [Save to disk]
  • View 2LPZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LPZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LPZ, from MSDmotif at EBI
  • Fold representative 2lpz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lpz_D] [2lpz_P] [2lpz_S] [2lpz_Z] [2lpz_I] [2lpz] [2lpz_c] [2lpz_O] [2lpz_J] [2lpz_H] [2lpz_Y] [2lpz_E] [2lpz_C] [2lpz_Q] [2lpz_K] [2lpz_a] [2lpz_A] [2lpz_T] [2lpz_X] [2lpz_b] [2lpz_L] [2lpz_B] [2lpz_N] [2lpz_V] [2lpz_G] [2lpz_W] [2lpz_M] [2lpz_U] [2lpz_R] [2lpz_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LPZ
  • Community annotation for 2LPZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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