2LQ6 Metal Binding Protein date Feb 25, 2012
title Solution Structure Of Brd1 Phd2 Finger
authors L.Liu, J.Wu
compound source
Molecule: Bromodomain-Containing Protein 1
Chain: A
Fragment: Unp Residues 317-394
Synonym: Br140-Like Protein, Bromodomain And Phd Finger-Con Protein 2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd1, Brl, Brpf2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet28
methodSolution NMR
ligand ZN enzyme
Primary referenceSolution structure of an atypical PHD finger in BRPF2 and its interaction with DNA., Liu L, Qin S, Zhang J, Ji P, Shi Y, Wu J, J Struct Biol. 2012 Oct;180(1):165-73. doi: 10.1016/j.jsb.2012.06.014. Epub 2012 , Jul 20. PMID:22820306
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (406 Kb) [Save to disk]
  • Biological Unit Coordinates (2lq6.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2LQ6
  • CSU: Contacts of Structural Units for 2LQ6
  • Original NMR restraints for 2LQ6 from PDB
  • Retrieve 2LQ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LQ6 from S2C, [Save to disk]
  • View 2LQ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LQ6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LQ6, from MSDmotif at EBI
  • Fold representative 2lq6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lq6_A] [2lq6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LQ6: [PHD ] by SMART
  • Other resources with information on 2LQ6
  • Community annotation for 2LQ6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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