2LRI Transcription date Apr 03, 2012
title Nmr Structure Of The Second Phd Finger Of Aire (Aire-Phd2)
authors M.Gaetani, F.Chignola, L.Mollica, G.Quilici, V.Mannella, D.Spilio G.Musco
compound source
Molecule: Autoimmune Regulator
Chain: C
Fragment: Phd-Type 2 Zinc Finger Residues 423-485
Synonym: Autoimmune Polyendocrinopathy Candidiasis Ectoderm Dystrophy Protein, Apeced Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aire, Apeced
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet-24d
methodSolution NMR
ligand ZN enzyme
Primary referenceAIRE-PHD fingers are structural hubs to maintain the integrity of chromatin-associated interactome., Gaetani M, Matafora V, Saare M, Spiliotopoulos D, Mollica L, Quilici G, Chignola F, Mannella V, Zucchelli C, Peterson P, Bachi A, Musco G, Nucleic Acids Res. 2012 Dec 1;40(22):11756-68. doi: 10.1093/nar/gks933. Epub 2012, Oct 15. PMID:23074189
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (865 Kb) [Save to disk]
  • Biological Unit Coordinates (2lri.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 2LRI
  • CSU: Contacts of Structural Units for 2LRI
  • Original NMR restraints for 2LRI from PDB
  • Retrieve 2LRI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LRI from S2C, [Save to disk]
  • View 2LRI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LRI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LRI, from MSDmotif at EBI
  • Fold representative 2lri from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lri] [2lri_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LRI: [PHD ] by SMART
  • Other resources with information on 2LRI
  • Community annotation for 2LRI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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