2LSP solution structures of BRD4 second bromodomain with NF-kB-K310ac peptide date
authors Zhang, G., Liu, R., Zhong, Y., Plotnikov, A.N., Zhang, W., Rusinova, E., Gerona-Nevarro, G., Moshkina, N., Joshua, J., Chuang, P.Y., Ohlmeyer, M., He, J., Zhou, M.M.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ALY enzyme
Primary referenceDown-regulation of NF-kappaB Transcriptional Activity in HIV-associated Kidney Disease by BRD4 Inhibition., Zhang G, Liu R, Zhong Y, Plotnikov AN, Zhang W, Zeng L, Rusinova E, Gerona-Nevarro G, Moshkina N, Joshua J, Chuang PY, Ohlmeyer M, He JC, Zhou MM, J Biol Chem. 2012 Aug 17;287(34):28840-51. Epub 2012 May 29. PMID:22645123
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (740 Kb) [Save to disk]
  • Biological Unit Coordinates (2lsp.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2LSP
  • CSU: Contacts of Structural Units for 2LSP
  • Original NMR restraints for 2LSP from PDB
  • Retrieve 2LSP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LSP from S2C, [Save to disk]
  • View 2LSP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LSP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LSP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lsp] [2lsp_B] [2lsp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LSP: [BROMO ] by SMART
  • Other resources with information on 2LSP
  • Community annotation for 2LSP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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