2LT8 Antimicrobial Protein date May 15, 2012
title Eurocin Solution Structure
authors J.S.Oeemig, C.Lynggaard, D.H.Knudsen, F.T.Hansen, K.D.Noergaard, T.Schneider, B.S.Vad, S.Neve, H.Kristensen, H.Sahl, D.E.Otzen, R.
compound source
Molecule: Eurocin
Chain: A
Engineered: Yes
 Organism_scientific: Eurotium Amstelodami
Organism_taxid: 5054
Expression_system: Aspergillus Oryzae
Expression_system_taxid: 5062
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEurocin, a new fungal defensin: structure, lipid binding and its mode of action., Oeemig JS, Lynggaard C, Knudsen DH, Hansen FT, Noergaard KD, Schneider T, Vad BS, Sandvang D, Nielsen LA, Neve S, Kristensen HH, Sahl HG, Otzen DE, Wimmer R, J Biol Chem. 2012 Oct 23. PMID:23093408
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (2lt8.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 2LT8
  • Original NMR restraints for 2LT8 from PDB
  • Retrieve 2LT8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LT8 from S2C, [Save to disk]
    • View 2LT8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LT8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LT8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lt8_A] [2lt8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2LT8
  • Community annotation for 2LT8 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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