2LTO Transcription Transferase date May 30, 2012
title Tdrd3 Complex
authors T.Sikorsky
compound source
Molecule: Tudor Domain-Containing Protein 3
Chain: A
Fragment: Tudor Domain Residues 554-608
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tdrd3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet22b

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb1
Chain: B
Fragment: Unp Residues 1804-1816
Synonym: Rna Polymerase II Subunit B1, Dna-Directed Rna Pol Subunit A, Dna-Directed Rna Polymerase III Largest Subunit, Directed Rna Polymerase II Subunit Rpb1;
Ec: 2.7.7.6, 2.7.7.48
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand DA2 enzyme Transferase E.C.2.7.7.6 BRENDA
Primary referenceRecognition of asymmetrically dimethylated arginine by TDRD3., Sikorsky T, Hobor F, Krizanova E, Pasulka J, Kubicek K, Stefl R, Nucleic Acids Res. 2012 Dec 1;40(22):11748-55. doi: 10.1093/nar/gks929. Epub 2012, Oct 12. PMID:23066109
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (390 Kb) [Save to disk]
  • Biological Unit Coordinates (2lto.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 2LTO
  • CSU: Contacts of Structural Units for 2LTO
  • Original NMR restraints for 2LTO from PDB
  • Retrieve 2LTO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LTO from S2C, [Save to disk]
  • View 2LTO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LTO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LTO, from MSDmotif at EBI
  • Fold representative 2lto from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lto_A] [2lto_B] [2lto]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LTO: [TUDOR ] by SMART
  • Other resources with information on 2LTO
  • Community annotation for 2LTO at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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