2LUE Protein Binding date Jun 13, 2012
title Lc3b Optn-Lir Ptot Complex Structure
authors V.V.Rogov, A.Rozenknop, F.Loehr, P.Guentert, V.Doetsch
compound source
Molecule: Microtubule-Associated Proteins 1a1b Light Chain
Chain: A
Fragment: Unp Residues 5-119
Synonym: Autophagy-Related Protein Lc3 B, Autophagy-Related Ubiquitin-Like Modifier Lc3 B, Map1 Light Chain 3-Like Prot Map1amap1b Light Chain 3 B, Map1amap1b Lc3 B, Microtubule Associated Protein 1 Light Chain 3 Beta;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map1lc3b, Map1alc3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Neb T7 Express
Expression_system_vector_type: Vector
Expression_system_vector: Petm60_ub3

Molecule: Optineurin
Chain: B
Fragment: Unp Residues 169-185
Synonym: E3-14.7k-Interacting Protein, Fip-2, Huntingtin Ye Partner L, Huntingtin-Interacting Protein 7, Hip-7, Hunting Interacting Protein L, Nemo-Related Protein, Optic Neuropat Inducing Protein, Transcription Factor Iiia-Interacting Pro Tfiiia-Intp;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: The Peptide Was Chemically Synthesized.
methodSolution NMR
ligand SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for phosphorylation-triggered autophagic clearance of Salmonella., Rogov VV, Suzuki H, Fiskin E, Wild P, Kniss A, Rozenknop A, Kato R, Kawasaki M, McEwan DG, Lohr F, Guntert P, Dikic I, Wakatsuki S, Dotsch V, Biochem J. 2013 Jun 28. PMID:23805866
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (873 Kb) [Save to disk]
  • Biological Unit Coordinates (2lue.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2LUE
  • CSU: Contacts of Structural Units for 2LUE
  • Original NMR restraints for 2LUE from PDB
  • Retrieve 2LUE in mmCIF format [Save to disk]
  • View 2LUE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LUE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LUE, from MSDmotif at EBI
  • Fold representative 2lue from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lue_A] [2lue_B] [2lue]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LUE
  • Community annotation for 2LUE at PDBWiki (http://pdbwiki.org)

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