2LXH NMR structure of the RING domain in ubiquitin ligase gp78 date
authors Das, R., Linag, Y., Mariano, J., Li, J., Huang, T., King, A., Weissman, A., Ji, X., Byrd, R.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ZN enzyme
Primary referenceAllosteric regulation of E2:E3 interactions promote a processive ubiquitination machine., Das R, Liang YH, Mariano J, Li J, Huang T, King A, Tarasov SG, Weissman AM, Ji X, Byrd RA, EMBO J. 2013 Aug 13. doi: 10.1038/emboj.2013.174. PMID:23942235
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk]
  • Biological Unit Coordinates (2lxh.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 2LXH
  • CSU: Contacts of Structural Units for 2LXH
  • Original NMR restraints for 2LXH from PDB
  • Retrieve 2LXH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LXH from S2C, [Save to disk]
  • View 2LXH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LXH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LXH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lxh_C] [2lxh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LXH: [RING ] by SMART
  • Other resources with information on 2LXH
  • Community annotation for 2LXH at PDBWiki (http://pdbwiki.org)

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