2LXI Rna Binding Protein date Aug 27, 2012
title Nmr Structure Of The N-Terminal Rna Binding Domain 1 (Rrm1) Protein Rbm10 From Homo Sapiens
authors P.Serrano, M.Geralt, S.K.Dutta, K.Wuthrich, Joint Center For Str Genomics (Jcsg), Partnership For T-Cell Biology (Tcell)
compound source
Molecule: Rna-Binding Protein 10
Chain: A
Fragment: Rrm 1 Domain Residues 128-218
Synonym: G Patch Domain-Containing Protein 9, Rna-Binding M Protein 10, Rna-Binding Protein S1-1, S1-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbm10, Dxs8237e, Gpatc9, Gpatch9, Kiaa0122
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pspeedet
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (494 Kb) [Save to disk]
  • Biological Unit Coordinates (2lxi.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2LXI
  • Original NMR restraints for 2LXI from PDB
  • Retrieve 2LXI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LXI from S2C, [Save to disk]
  • View 2LXI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LXI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LXI, from MSDmotif at EBI
  • Fold representative 2lxi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lxi_A] [2lxi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2LXI with the sequences similar proteins can be viewed for 2LXI's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2LXI
  • Community annotation for 2LXI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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