2M0P Lipid Binding Protein date Nov 01, 2012
title Solution Structure Of The Tenth Complement Type Repeat Of Hu Megalin
authors R.Dagil, B.Kragelund
compound source
Molecule: Low-Density Lipoprotein Receptor-Related Protein
Chain: A
Synonym: Lrp-2, Glycoprotein 330, Gp330, Megalin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrp2
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppicac
methodSolution NMR
ligand CA enzyme
Primary referenceGentamicin Binds to Megalin as a Competitive Inhibitor Using the Common Ligand Binding Motif of Complement Type Repeats., Dagil R, O'Shea C, Nykjaer A, Bonvin AM, Kragelund BB, J Biol Chem. 2012 Dec 27. PMID:23275343
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (2m0p.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 2M0P
  • CSU: Contacts of Structural Units for 2M0P
  • Original NMR restraints for 2M0P from PDB
  • Retrieve 2M0P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M0P from S2C, [Save to disk]
  • View 2M0P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M0P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M0P, from MSDmotif at EBI
  • Fold representative 2m0p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m0p] [2m0p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2M0P: [LDLa ] by SMART
  • Other resources with information on 2M0P
  • Community annotation for 2M0P at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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