2M1K Protein Binding date Nov 29, 2012
title Interaction Of Human S100a6 (C3s) With V Domain Of Receptor Advanced Glycation End Products (Rage)
authors A.A.Gupta, C.Yu
compound source
Molecule: Protein S100-A6
Chain: B, D
Synonym: Calcyclin, Growth Factor-Inducible Protein 2a9, Ml Prolactin Receptor-Associated Protein, Pra, S100 Calcium-Bi Protein A6;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cacy, S100a6
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet(20b)+

Molecule: Advanced Glycosylation End Product-Specific Recep
Chain: A, C
Fragment: Unp Residues 23-121
Synonym: Receptor For Advanced Glycosylation End Products
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ager, Rage
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet(15b)+
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
D, B
  • ion transmembrane transporte...


  • Primary referenceInteraction of the S100A6 mutant (C3S) with the V domain of the receptor for advanced glycation end products (RAGE)., Mohan SK, Gupta AA, Yu C, Biochem Biophys Res Commun. 2013 May 3;434(2):328-33. doi:, 10.1016/j.bbrc.2013.03.049. Epub 2013 Mar 26. PMID:23537648
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2270 Kb) [Save to disk]
  • Biological Unit Coordinates (2m1k.pdb1.gz) 114 Kb
  • CSU: Contacts of Structural Units for 2M1K
  • Original NMR restraints for 2M1K from PDB
  • Retrieve 2M1K in mmCIF format [Save to disk]
  • View 2M1K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M1K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M1K, from MSDmotif at EBI
  • Fold representative 2m1k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m1k_C] [2m1k] [2m1k_D] [2m1k_B] [2m1k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2M1K: [IG] [S_100 ] by SMART
  • Other resources with information on 2M1K
  • Community annotation for 2M1K at PDBWiki (http://pdbwiki.org)

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