2M2B Rna Binding Protein date Dec 17, 2012
title Nmr Structure Of The Rrm2 Domain Of The Protein Rbm10 From H Sapiens
authors P.Serrano, M.Geralt, S.K.Dutta, K.Wuthrich, R.L.Wrobel, S.Makino, T.M.Misenhiemer, J.L.Markley, B.G.Fox, Joint Center For Struct Genomics (Jcsg), Partnership For T-Cell Biology (Tcell), Mito Protein Partnership (Mpp)
compound source
Molecule: Rna-Binding Protein 10
Chain: A
Fragment: Unp Residues 277-408
Synonym: G Patch Domain-Containing Protein 9, Rna-Binding M Protein 10, Rna-Binding Protein S1-1, S1-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbm10, Dxs8237e, Gpatc9, Gpatch9, Kiaa0122
Expression_system: Cell-Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Peu-His-Flex
Other_details: Wheat Germ
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (707 Kb) [Save to disk]
  • Biological Unit Coordinates (2m2b.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 2M2B
  • Original NMR restraints for 2M2B from PDB
  • Retrieve 2M2B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M2B from S2C, [Save to disk]
  • View 2M2B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M2B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M2B, from MSDmotif at EBI
  • Fold representative 2m2b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m2b_A] [2m2b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2M2B with the sequences similar proteins can be viewed for 2M2B's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2M2B
  • Community annotation for 2M2B at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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