2M2D Human programmed cell death 1 receptor date
authors Veverka, V., Cheng, X., Waters, L.C., Muskett, F.W., Morgan, S., Lesley, A., Griffiths, M., Stubberfield, C., Griffin, R., Henry, A.J., Robinson, M.K., Jansson, A., Ladbury, J.E., Ikemizu, S., Davis, S.J., Carr, M.D.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and interactions of the human programmed cell death 1 receptor., Cheng X, Veverka V, Radhakrishnan A, Waters LC, Muskett FW, Morgan S, Huo J, Yu C, Evans EJ, Leslie AJ, Griffiths M, Stubberfield C, Griffin R, Henry AJ, Jansson A, Ladbury JE, Ikemizu S, Carr MD, Davis SJ, J Biol Chem. 2013 Feb 15. PMID:23417675
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1076 Kb) [Save to disk]
  • Biological Unit Coordinates (2m2d.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 2M2D
  • Original NMR restraints for 2M2D from PDB
  • Retrieve 2M2D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M2D from S2C, [Save to disk]
    • View 2M2D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2M2D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2M2D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m2d] [2m2d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2M2D: [IGv ] by SMART
    • Other resources with information on 2M2D
  • Community annotation for 2M2D at PDBWiki (http://pdbwiki.org)

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