2M2W Transferase Dna date Jan 03, 2013
title Ternary Complex Of Asfv Pol X With Dna And Mgdgtp
authors W.Wu, M.Su, M.Tsai
compound source
Molecule: Repair Dna Polymerase X
Chain: A
Synonym: Pol X
Ec: 2.7.7.7
Engineered: Yes
 Organism_scientific: African Swine Fever Virus
Organism_taxid: 10497
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet-17b

Molecule: 5'-D(Pgpgpcpgpapapgpcpcpgpgpgptpgp Pgpcpapcp(Doc))-3';
Chain: B
Engineered: Yes
Synthetic: Yes
methodSolution NMR
ligand DGT, DOC, MG enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...


    • Primary referenceHow a Low-Fidelity DNA Polymerase Chooses Non-Watson-Crick from Watson-Crick Incorporation., Wu WJ, Su MI, Wu JL, Kumar S, Lim LH, Wang CW, Nelissen FH, Chen MC, Doreleijers JF, Wijmenga SS, Tsai MD, J Am Chem Soc. 2014 Mar 21. PMID:24617852
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (715 Kb) [Save to disk]
  • Biological Unit Coordinates (2m2w.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 2M2W
  • CSU: Contacts of Structural Units for 2M2W
  • Original NMR restraints for 2M2W from PDB
  • Retrieve 2M2W in mmCIF format [Save to disk]
    • View 2M2W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2M2W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2M2W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m2w_B] [2m2w_A] [2m2w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2M2W
  • Community annotation for 2M2W at PDBWiki (http://pdbwiki.org)

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