2M32 Cell Adhesion date Jan 07, 2013
title Alpha-1 Integrin I-Domain In Complex With Glogen Triple Heli Peptide
authors Y.Chin, S.Headey, B.Mohanty, P.Mcewan, J.Swarbrick, T.Mulhern, J.E J.Simpson, M.Scanlon
compound source
Molecule: Integrin Alpha-1
Chain: A
Synonym: Cd49 Antigen-Like Family Member A, Laminin And Col Receptor, Vla-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itga1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet28a+

Molecule: Glogen Peptide
Chain: B, C, D
Engineered: Yes

Synthetic: Yes
Other_details: Synthetically Obtained
methodSolution NMR
ligand ACE, HYP, MG, NH2 enzyme
Primary referenceThe structure of integrin alpha1I domain in complex with a collagen-mimetic peptide., Chin YK, Headey SJ, Mohanty B, Patil R, McEwan PA, Swarbrick JD, Mulhern TD, Emsley J, Simpson JS, Scanlon MJ, J Biol Chem. 2013 Dec 27;288(52):36796-809. doi: 10.1074/jbc.M113.480251. Epub, 2013 Nov 1. PMID:24187131
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (709 Kb) [Save to disk]
  • Biological Unit Coordinates (2m32.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 2M32
  • CSU: Contacts of Structural Units for 2M32
  • Original NMR restraints for 2M32 from PDB
  • Retrieve 2M32 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M32 from S2C, [Save to disk]
  • View 2M32 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M32
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M32, from MSDmotif at EBI
  • Fold representative 2m32 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m32_B] [2m32_D] [2m32] [2m32_C] [2m32_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2M32: [VWA ] by SMART
  • Other resources with information on 2M32
  • Community annotation for 2M32 at PDBWiki (http://pdbwiki.org)

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