2M34 Transcription date Jan 09, 2013
title Nmr Structure Of The Homeodomain Transcription Factor Gbx1 F Sapiens
authors A.Proudfoot, P.Serrano, M.Geralt, K.Wuthrich, Partnership For St Biology (Stemcell), Joint Center For Structural Genomics (Jc
compound source
Molecule: Homeobox Protein Gbx-1
Chain: A
Fragment: Dna Binding Homeobox Residues 256-325
Synonym: Gastrulation And Brain-Specific Homeobox Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gbx1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet46
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (426 Kb) [Save to disk]
  • Biological Unit Coordinates (2m34.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 2M34
  • Original NMR restraints for 2M34 from PDB
  • Retrieve 2M34 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M34 from S2C, [Save to disk]
  • View 2M34 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M34
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M34, from MSDmotif at EBI
  • Fold representative 2m34 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m34_A] [2m34]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2M34: [HOX ] by SMART
  • Alignments of the sequence of 2M34 with the sequences similar proteins can be viewed for 2M34's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2M34
  • Community annotation for 2M34 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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