2M38 Peptide Binding Protein date Jan 14, 2013
title Ptb Domain Of Aida1
authors L.Donaldson
compound source
Molecule: Ankyrin Repeat And Sterile Alpha Motif Domain-Con Protein 1b;
Chain: A
Fragment: Phosphotyrosine Binding Domain
Synonym: Amyloid-Beta Protein Intracellular Domain-Associat 1, Aida-1, E2a-Pbx1-Associated Protein, Eb-1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anks1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pjexpress405
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (608 Kb) [Save to disk]
  • Biological Unit Coordinates (2m38.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 2M38
  • Original NMR restraints for 2M38 from PDB
  • Retrieve 2M38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M38 from S2C, [Save to disk]
  • View 2M38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M38
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M38, from MSDmotif at EBI
  • Fold representative 2m38 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m38] [2m38_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2M38: [PTB ] by SMART
  • Other resources with information on 2M38
  • Community annotation for 2M38 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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