2M3M Oncoprotein Cell Adhesion date Jan 22, 2013
title Solution Structure Of A Complex Consisting Of Hdlgsap-97 Re 318-406 And Hpv51 Oncoprotein E6 Residues 141-151
authors A.Mischo, O.Ohlenschlager, M.Gorlach
compound source
Molecule: Disks Large Homolog 1
Chain: A
Fragment: Hdlgpdz2, Unp Residues 318-406
Synonym: Synapse-Associated Protein 97, Sap-97, Sap97, Hdlg
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dlg1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector: Pet30

Molecule: Protein E6
Chain: B
Fragment: E6ct11, Unp Residues 141-151
Engineered: Yes

Organism_scientific: Human Papillomavirus
Organism_taxid: 10595
Strain: Type 51
Gene: E6
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector: Ptyb21
methodSolution NMR
ligand PCA enzyme
Primary referenceStructural insights into a wildtype domain of the oncoprotein E6 and its interaction with a PDZ domain., Mischo A, Ohlenschlager O, Hortschansky P, Ramachandran R, Gorlach M, PLoS One. 2013 Apr 30;8(4):e62584. doi: 10.1371/journal.pone.0062584. Print 2013. PMID:23638119
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (631 Kb) [Save to disk]
  • Biological Unit Coordinates (2m3m.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 2M3M
  • CSU: Contacts of Structural Units for 2M3M
  • Original NMR restraints for 2M3M from PDB
  • Retrieve 2M3M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M3M from S2C, [Save to disk]
  • View 2M3M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M3M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M3M, from MSDmotif at EBI
  • Fold representative 2m3m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m3m_B] [2m3m] [2m3m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2M3M: [PDZ ] by SMART
  • Other resources with information on 2M3M
  • Community annotation for 2M3M at PDBWiki (http://pdbwiki.org)

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