2M3X Unknown Function date Jan 28, 2013
title Solution Structure Of Ph1500: A Homohexameric Protein Center 12-Bladed Beta-Propeller
authors I.Varnay, V.Truffault, H.Kessler, M.Coles
compound source
Molecule: Ph1500
Chain: A, B, C, D, E, F
Engineered: Yes
Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 70601
Strain: Atcc 700860 Dsm 12428 Jcm 9974 Nbrc 100139
Gene: Ph1500
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet28b
methodSolution NMR
Primary referenceOptimized measurement temperature gives access to the solution structure of a 49 kDa homohexameric beta-propeller., Varnay I, Truffault V, Djuranovic S, Ursinus A, Coles M, Kessler H, J Am Chem Soc. 2010 Nov 10;132(44):15692-8. doi: 10.1021/ja1064608. PMID:20961124
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (4976 Kb) [Save to disk]
  • Biological Unit Coordinates (2m3x.pdb1.gz) 285 Kb
  • CSU: Contacts of Structural Units for 2M3X
  • Original NMR restraints for 2M3X from PDB
  • Retrieve 2M3X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M3X from S2C, [Save to disk]
  • View 2M3X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M3X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M3X, from MSDmotif at EBI
  • Fold representative 2m3x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m3x] [2m3x_E] [2m3x_B] [2m3x_D] [2m3x_C] [2m3x_A] [2m3x_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2M3X: [CDC48_2 ] by SMART
  • Other resources with information on 2M3X
  • Community annotation for 2M3X at PDBWiki (http://pdbwiki.org)

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