2M3Z Viral Protein date Jan 28, 2013
title Nmr Solution Structure Of Hiv-1 Nucleocapsid Protein In Comp An Inhibitor Displaying A 2 Inhibitors:1 Nc Stoichiometry
authors N.Goudreau, O.Hucke
compound source
Molecule: Nucleocapsid Protein P7
Chain: A
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus Type 1
Organism_common: Hiv-1
Organism_taxid: 11698
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11a
methodSolution NMR
ligand 1HF, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery and Structural Characterization of a New Inhibitor Series of HIV-1 Nucleocapsid Function: NMR Solution Structure Determination of a Ternary Complex Involving a 2:1 Inhibitor/NC Stoichiometry., Goudreau N, Hucke O, Faucher AM, Grand-Maitre C, Lepage O, Bonneau PR, Mason SW, Titolo S, J Mol Biol. 2013 Feb 26. pii: S0022-2836(13)00124-1. doi:, 10.1016/j.jmb.2013.02.022. PMID:23485336
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (2m3z.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 2M3Z
  • CSU: Contacts of Structural Units for 2M3Z
  • Original NMR restraints for 2M3Z from PDB
  • Retrieve 2M3Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M3Z from S2C, [Save to disk]
    • View 2M3Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2M3Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2M3Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m3z] [2m3z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2M3Z: [ZnF_C2HC ] by SMART
    • Other resources with information on 2M3Z
  • Community annotation for 2M3Z at PDBWiki (http://pdbwiki.org)

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