2M49 Cytokine Metal Binding Protein date Feb 03, 2013
title Structural Insights Into Human S100b And Basic Fibroblast Gr Factor (Fgf2) Interaction
authors A.A.Gupta, C.Yu
compound source
Molecule: Fibroblast Growth Factor 2
Chain: A, C
Fragment: Unp Residues 161-286
Synonym: Fgf-2, Basic Fibroblast Growth Factor, Bfgf, Hepar Growth Factor 2, Hbgf-2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgf2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pet(20b)+

Molecule: Protein S100-B
Chain: B, D
Synonym: S-100 Protein Beta Chain, S-100 Protein Subunit Be Calcium-Binding Protein B;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: S100b
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pet(20b)+
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructural insights into the interaction of human S100B and basic fibroblast growth factor (FGF2): Effects on FGFR1 receptor signaling., Gupta AA, Chou RH, Li H, Yang LW, Yu C, Biochim Biophys Acta. 2013 Dec;1834(12):2606-19. doi:, 10.1016/j.bbapap.2013.09.012. Epub 2013 Sep 22. PMID:24063890
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1304 Kb) [Save to disk]
  • Biological Unit Coordinates (2m49.pdb1.gz) 131 Kb
  • CSU: Contacts of Structural Units for 2M49
  • Original NMR restraints for 2M49 from PDB
  • Retrieve 2M49 in mmCIF format [Save to disk]
  • View 2M49 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M49
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M49, from MSDmotif at EBI
  • Fold representative 2m49 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m49] [2m49_C] [2m49_A] [2m49_B] [2m49_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2M49: [FGF] [S_100 ] by SMART
  • Other resources with information on 2M49
  • Community annotation for 2M49 at PDBWiki (http://pdbwiki.org)

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