2M59 Transferase date Feb 19, 2013
title Spatial Structure Of Dimeric Vegfr2 Membrane Domain In Dpc M
authors K.S.Mineev, A.S.Arseniev, M.A.Shulepko, E.N.Lyukmanova
compound source
Molecule: Vascular Endothelial Growth Factor Receptor 2
Chain: A, B
Fragment: Unp Residues 759-795
Synonym: Vegfr-2, Fetal Liver Kinase 1, Flk-1, Kinase Inser Receptor, Kdr, Protein-Tyrosine Kinase Receptor Flk-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kdr, Flk1, Vegfr2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet20b(+)
methodSolution NMR
enzyme Transferase E.C. BRENDA
Primary referenceStructural and functional characterization of alternative transmembrane domain conformations in VEGF receptor 2 activation., Manni S, Mineev KS, Usmanova D, Lyukmanova EN, Shulepko MA, Kirpichnikov MP, Winter J, Matkovic M, Deupi X, Arseniev AS, Ballmer-Hofer K, Structure. 2014 Aug 5;22(8):1077-89. doi: 10.1016/j.str.2014.05.010. Epub 2014, Jun 26. PMID:24980797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (2m59.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2M59
  • Original NMR restraints for 2M59 from PDB
  • Retrieve 2M59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M59 from S2C, [Save to disk]
  • View 2M59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 2M59
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M59, from MSDmotif at EBI
  • Fold representative 2m59 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m59] [2m59_A] [2m59_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2M59
  • Community annotation for 2M59 at PDBWiki (http://pdbwiki.org)

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