2M5U Rna date Mar 08, 2013
title Nmr Structure Of The P4 Hairpin Of The Cpeb3 Ribozyme
authors M.Skilandat, M.Rowinska-Zyrek, R.K.O.Sigel
compound source
Molecule: Rna_(5'- R(Gpgpcpapgpapupupcpupgpgpupgpapapupcpup 3');
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: The Sequence Was Produced By In-Vitro Transc From A Synthetic Dsdna Template Using T7 Rna-Polymerase.
methodSolution NMR
Primary referenceSolution structure and metal ion binding sites of the human CPEB3 ribozyme's P4 domain., Skilandat M, Rowinska-Zyrek M, Sigel RK, J Biol Inorg Chem. 2014 Mar 21. PMID:24652468
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (2m5u.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 2M5U
  • Original NMR restraints for 2M5U from PDB
  • Retrieve 2M5U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M5U from S2C, [Save to disk]
    • View 2M5U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2M5U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2M5U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m5u_A] [2m5u]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2M5U
  • Community annotation for 2M5U at PDBWiki (http://pdbwiki.org)

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