2M5V	Immune System	date	Mar 11, 2013
title	Three-Dimensional Structure Of Human Nlrp10pynod Pyrin Doma
authors	M.Y.Su, C.F.Chang, C.I.Chang
compound		source
Molecule: Nacht, Lrr And Pyd Domains-Containing Protein 10 Chain: A Fragment: Unp Residues 1-100 Synonym: Nucleotide-Binding Oligomerization Domain Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nlrp10, Nalp10, Nod8, Pynod Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Petm11
method	Solution NMR
Primary reference	Three-Dimensional Structure of Human NLRP10/PYNOD Pyrin Domain Reveals a Homotypic Interaction Site Distinct from Its Mouse Homologue., Su MY, Kuo CI, Chang CF, Chang CI, PLoS One. 2013 Jul 4;8(7):e67843. doi: 10.1371/journal.pone.0067843. Print 2013. PMID:23861819

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (653 Kb) [Save to disk] Biological Unit Coordinates (2m5v.pdb1.gz) 33 Kb CSU: Contacts of Structural Units for 2M5V Original NMR restraints for 2M5V from PDB Retrieve 2M5V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2M5V from S2C, [Save to disk]

View 2M5V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2M5V

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2M5V, from MSDmotif at EBI Fold representative 2m5v from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2m5v_A] [2m5v] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2M5V: [PYRIN ] by SMART

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