2M5V Immune System date Mar 11, 2013
title Three-Dimensional Structure Of Human Nlrp10pynod Pyrin Doma
authors M.Y.Su, C.F.Chang, C.I.Chang
compound source
Molecule: Nacht, Lrr And Pyd Domains-Containing Protein 10
Chain: A
Fragment: Unp Residues 1-100
Synonym: Nucleotide-Binding Oligomerization Domain Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nlrp10, Nalp10, Nod8, Pynod
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11
methodSolution NMR
Primary referenceThree-Dimensional Structure of Human NLRP10/PYNOD Pyrin Domain Reveals a Homotypic Interaction Site Distinct from Its Mouse Homologue., Su MY, Kuo CI, Chang CF, Chang CI, PLoS One. 2013 Jul 4;8(7):e67843. doi: 10.1371/journal.pone.0067843. Print 2013. PMID:23861819
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (653 Kb) [Save to disk]
  • Biological Unit Coordinates (2m5v.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 2M5V
  • Original NMR restraints for 2M5V from PDB
  • Retrieve 2M5V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M5V from S2C, [Save to disk]
  • View 2M5V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M5V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M5V, from MSDmotif at EBI
  • Fold representative 2m5v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m5v_A] [2m5v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2M5V: [PYRIN ] by SMART
  • Other resources with information on 2M5V
  • Community annotation for 2M5V at PDBWiki (http://pdbwiki.org)

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