2M6X Membrane Protein date Apr 12, 2013
title Structure Of The P7 Channel Of Hepatitis C Virus, Genotype 5
authors B.Ouyang, J.J.Chou
compound source
Molecule: P7
Chain: A, B, C, D, E, F
Engineered: Yes
Mutation: Yes
Organism_scientific: Hepatitis C Virus
Organism_common: Hcv
Organism_taxid: 356419
Strain: Euh1480
Variant: Genotype 5a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Vector
Expression_system_vector: Pmm-Lr6
methodSolution NMR
subcellular loc. Membrane localization by OPM: Endoplasmic reticulum membrane
luminal side
cytoplasmic side
Primary referenceUnusual architecture of the p7 channel from hepatitis C virus., OuYang B, Xie S, Berardi MJ, Zhao X, Dev J, Yu W, Sun B, Chou JJ, Nature. 2013 Jun 27;498(7455):521-5. doi: 10.1038/nature12283. Epub 2013 Jun 5. PMID:23739335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1497 Kb) [Save to disk]
  • Biological Unit Coordinates (2m6x.pdb1.gz) 100 Kb
  • CSU: Contacts of Structural Units for 2M6X
  • Original NMR restraints for 2M6X from PDB
  • Retrieve 2M6X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M6X from S2C, [Save to disk]
  • View 2M6X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M6X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M6X, from MSDmotif at EBI
  • Fold representative 2m6x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m6x_B] [2m6x_F] [2m6x] [2m6x_C] [2m6x_A] [2m6x_E] [2m6x_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2M6X
  • Community annotation for 2M6X at PDBWiki (http://pdbwiki.org)

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