2M8N Viral Protein date May 24, 2013
title Hiv-1 Capsid Monomer Structure
authors L.Deshmukh, C.D.Schwieters, A.Grishaev, G.Clore, R.Ghirlando
compound source
Molecule: Capsid Protein P24
Chain: A
Synonym: In
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1 (N Isolate);
Organism_common: Hiv-1
Organism_taxid: 11698
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector: Pet11a
methodSolution NMR; Solution Scattering

Primary referenceStructure and Dynamics of Full-Length HIV-1 Capsid Protein in Solution., Deshmukh L, Schwieters CD, Grishaev A, Ghirlando R, Baber JL, Clore GM, J Am Chem Soc. 2013 Oct 17. PMID:24066695
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (5792 Kb) [Save to disk]
  • Biological Unit Coordinates (2m8n.pdb1.gz) 59 Kb
  • CSU: Contacts of Structural Units for 2M8N
  • Original NMR restraints for 2M8N from PDB
  • Retrieve 2M8N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M8N from S2C, [Save to disk]
  • View 2M8N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M8N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M8N, from MSDmotif at EBI
  • Fold representative 2m8n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m8n] [2m8n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2M8N
  • Community annotation for 2M8N at PDBWiki (http://pdbwiki.org)

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