2MA8 Solution NMR Structure of Salmonella typhimurium LT2 Secreted Protein SrfN: Northeast Structural Genomics Consortium Target StR109 date
authors Cort, J.R., Eletsky, A., Adkins, J.N., Burnet, M.C., Parish, D., Liu, K., Sukumaran, D.K., Jiang, M., Cunningham, K., Ma, T., Xiao, R., Rost, B., Montelione, G.T., Szyperski, T., NESG, Northeast.Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceStructural and Functional Characterization of DUF1471 Domains of Salmonella Proteins SrfN, YdgH/SssB, and YahO., Eletsky A, Michalska K, Houliston S, Zhang Q, Daily MD, Xu X, Cui H, Yee A, Lemak A, Wu B, Garcia M, Burnet MC, Meyer KM, Aryal UK, Sanchez O, Ansong C, Xiao R, Acton TB, Adkins JN, Montelione GT, Joachimiak A, Arrowsmith CH, Savchenko A, Szyperski T, Cort JR, PLoS One. 2014 Jul 10;9(7):e101787. doi: 10.1371/journal.pone.0101787., eCollection 2014. PMID:25010333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (837 Kb) [Save to disk]
  • Biological Unit Coordinates (2ma8.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 2MA8
  • Original NMR restraints for 2MA8 from PDB
  • Retrieve 2MA8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MA8 from S2C, [Save to disk]
    • View 2MA8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2MA8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MA8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ma8_A] [2ma8_B] [2ma8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2MA8
  • Community annotation for 2MA8 at PDBWiki (http://pdbwiki.org)

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