2MA9 Viral Protein Protein Binding date Jul 01, 2013
title Hiv-1 Vif Socs-Box And Elongin Bc Solution Structure
authors Z.Lu, J.R.Bergeron, R.A.Atkinson, T.Schaller, D.A.Veselkov, A.Ore Y.Yang, S.J.Matthews, M.H.Malim, M.R.Sanderson
compound source
Molecule: Virion Infectivity Factor
Chain: A
Fragment: Unp Residues 139-174
Synonym: Vif, Sor Protein, Virion Infectivity Factor P17, V Infectivity Factor P7;
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1
Organism_common: Hiv-1
Organism_taxid: 11698
Gene: Vif
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30

Molecule: Transcription Elongation Factor B Polypeptide 2
Chain: B
Synonym: Elongin 18 Kda Subunit, Elongin-B, Elob, Rna Polym Transcription Factor Siii Subunit B, Siii P18;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tceb2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet

Molecule: Transcription Elongation Factor B Polypeptide 1
Chain: C
Fragment: Unp Residues 19-109
Synonym: Elongin 15 Kda Subunit, Elongin-C, Eloc, Rna Polym Transcription Factor Siii Subunit C, Siii P15;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tceb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceInsight into the HIV-1 Vif SOCS-box-ElonginBC interaction., Lu Z, Bergeron JR, Atkinson RA, Schaller T, Veselkov DA, Oregioni A, Yang Y, Matthews SJ, Malim MH, Sanderson MR, Open Biol. 2013 Nov 13;3(11):130100. doi: 10.1098/rsob.130100. PMID:24225024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (779 Kb) [Save to disk]
  • Biological Unit Coordinates (2ma9.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 2MA9
  • Original NMR restraints for 2MA9 from PDB
  • Retrieve 2MA9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MA9 from S2C, [Save to disk]
  • View 2MA9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MA9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MA9, from MSDmotif at EBI
  • Fold representative 2ma9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ma9_B] [2ma9_A] [2ma9] [2ma9_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2MA9: [Skp1] [UBQ ] by SMART
  • Other resources with information on 2MA9
  • Community annotation for 2MA9 at PDBWiki (http://pdbwiki.org)

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