2MBH Transcription date Jul 31, 2013
title Nmr Structure Of Eklf(22-40)Ubiquitin Complex
authors L.Raiola, J.G.Omichinski
compound source
Molecule: Krueppel-Like Factor 1
Chain: B
Synonym: Erythroid Krueppel-Like Transcription Factor, Eklf
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Klf1, Eklf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pgex-2t

Molecule: Ubiquitin
Chain: A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Rainbow Trout
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet21b+
methodSolution NMR
Primary referenceStructural Characterization of a Noncovalent Complex between Ubiquitin and the Transactivation Domain of the Erythroid-Specific Factor EKLF., Raiola L, Lussier-Price M, Gagnon D, Lafrance-Vanasse J, Mascle X, Arseneault G, Legault P, Archambault J, Omichinski JG, Structure. 2013 Nov 5;21(11):2014-24. doi: 10.1016/j.str.2013.08.027. Epub 2013, Oct 17. PMID:24139988
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (517 Kb) [Save to disk]
  • Biological Unit Coordinates (2mbh.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2MBH
  • Original NMR restraints for 2MBH from PDB
  • Retrieve 2MBH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MBH from S2C, [Save to disk]
  • View 2MBH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MBH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MBH, from MSDmotif at EBI
  • Fold representative 2mbh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mbh_B] [2mbh] [2mbh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2MBH: [UBQ ] by SMART
  • Other resources with information on 2MBH
  • Community annotation for 2MBH at PDBWiki (http://pdbwiki.org)

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