2MCM Apoprotein date May 08, 1991
title Macromomycin
authors P.Van Roey
compound source
Molecule: Macromomycin
Chain: A
Engineered: Yes
Organism_scientific: Streptomyces Macromomyceticus
Organism_taxid: 1917
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.290 35.580 38.040 90.00 99.59 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CA, MPD, MRD enzyme
note 2MCM is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure analysis of auromomycin apoprotein (macromomycin) shows importance of protein side chains to chromophore binding selectivity., Van Roey P, Beerman TA, Proc Natl Acad Sci U S A. 1989 Sep;86(17):6587-91. PMID:2771945
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (2mcm.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 2MCM
  • CSU: Contacts of Structural Units for 2MCM
  • Likely Quarternary Molecular Structure file(s) for 2MCM
  • Structure Factors (230 Kb)
  • Retrieve 2MCM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MCM from S2C, [Save to disk]
  • Re-refined 2mcm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2MCM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MCM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 2MCM from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MCM, from MSDmotif at EBI
  • Genome occurence of 2MCM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2mcm__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mcm] [2mcm_A]
  • SWISS-PROT database: [P01549]
  • Domain organization of [MACM_STRMA] by SWISSPFAM
  • Other resources with information on 2MCM
  • Community annotation for 2MCM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 2MCM from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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