2MD3 Antimicrobial Protein date Aug 29, 2013
title Fragment Based Approach And Binding Behavior Of Lfampinb Wit Lipopolysaccharide:Biophysical Aspects
authors A.Bhunia, S.Chatterjee, A.Ghosh, J.Jana
compound source
Molecule: Lactotransferrin
Chain: A
Synonym: Lactoferrin, Lactoferricin-B, Lfcin-B
Ec: 3.4.21.-
Engineered: Yes
Synthetic: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Other_details: The Peptide Was Chemically Synthesized.
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.21 BRENDA
Primary referenceSequence context induced antimicrobial activity: insight into lipopolysaccharide permeabilization., Ghosh A, Datta A, Jana J, Kar RK, Chatterjee C, Chatterjee S, Bhunia A, Mol Biosyst. 2014 Jun;10(6):1596-612. doi: 10.1039/c4mb00111g. Epub 2014 Apr 9. PMID:24714742
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (2md3.pdb1.gz) 3 Kb
  • CSU: Contacts of Structural Units for 2MD3
  • Original NMR restraints for 2MD3 from PDB
  • Retrieve 2MD3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MD3 from S2C, [Save to disk]
  • View 2MD3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MD3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MD3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2md3_A] [2md3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2MD3
  • Community annotation for 2MD3 at PDBWiki (http://pdbwiki.org)

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