2ME6 Transcription Dna date Sep 23, 2013
title Nmr Structure Of The Homeodomain Transcription Factor Gbx1 F Sapiens In Complex With The Dna Sequence Cgactaattagtcg
authors A.Proudfoot, P.Serrano, M.Geralt, K.Wuthrich, Joint Center For S Genomics (Jcsg), Partnership For Stem Cell Biology (Stemcell
compound source
Molecule: Homeobox Protein Gbx-1
Chain: A
Fragment: Homeobox Dna Binding Region, Residues 256-325
Synonym: Gastrulation And Brain-Specific Homeobox Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gbx1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet46

Molecule: Dna (5'-D(Cpgpapcptpapaptptpapgptpcp
Chain: B, C
Engineered: Yes

Synthetic: Yes
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (2me6.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 2ME6
  • Original NMR restraints for 2ME6 from PDB
  • Retrieve 2ME6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ME6 from S2C, [Save to disk]
  • View 2ME6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ME6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ME6, from MSDmotif at EBI
  • Fold representative 2me6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2me6_C] [2me6_B] [2me6_A] [2me6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2ME6: [HOX ] by SMART
  • Other resources with information on 2ME6
  • Community annotation for 2ME6 at PDBWiki (http://pdbwiki.org)

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