2MF1 Rna Binding Protein Rna date Oct 02, 2013
title Structural Basis Of The Non-Coding Rna Rsmz Acting As Protei Conformer R Of Rsmz(1-72)Rsme(Dimer) 1to3 Complex
authors O.Duss, E.Michel, M.Yulikov, M.Schubert, G.Jeschke, F.H.T.Allain
compound source
Molecule: Carbon Storage Regulator Homolog
Chain: A, B, C, D, E, F
Engineered: Yes
Organism_scientific: Pseudomonas Protegens Pf-5
Organism_taxid: 220664
Strain: Cha0
Gene: Rsme, Csra, Pfl_2095
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet28a

Molecule: Rna_(72-Mer)
Chain: G
Engineered: Yes

Synthetic: Yes
methodSolution NMR
Gene PFL
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructural basis of the non-coding RNA RsmZ acting as a protein sponge., Duss O, Michel E, Yulikov M, Schubert M, Jeschke G, Allain FH, Nature. 2014 May 29;509(7502):588-92. doi: 10.1038/nature13271. Epub 2014 May 14. PMID:24828038
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2645 Kb) [Save to disk]
  • Biological Unit Coordinates (2mf1.pdb1.gz) 133 Kb
  • CSU: Contacts of Structural Units for 2MF1
  • Original NMR restraints for 2MF1 from PDB
  • Retrieve 2MF1 in mmCIF format [Save to disk]
  • View 2MF1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MF1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MF1, from MSDmotif at EBI
  • Fold representative 2mf1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mf1_E] [2mf1_G] [2mf1_B] [2mf1_C] [2mf1_D] [2mf1] [2mf1_A] [2mf1_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2MF1
  • Community annotation for 2MF1 at PDBWiki (http://pdbwiki.org)

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