2MIB Cytokine date Dec 06, 1993
title The Structure Of Murine Interleukin-1 Beta At 2.8 Angstroms
authors J.P.Priestle, J.Van Oostrum, A.Schmitz, M.G.Gruetter
compound source
Molecule: Interleukin-1 Beta
Chain: A
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
symmetry Space Group: P 43
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.500 55.500 78.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.84 Å
related structures by homologous chain: 1ITB, 41BI
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of murine interleukin-1 beta at 2.8 A resolution., van Oostrum J, Priestle JP, Grutter MG, Schmitz A, J Struct Biol 1991 Oct;107(2):189-95. PMID:1807351
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (2mib.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2MIB
  • Likely Quarternary Molecular Structure file(s) for 2MIB
  • Retrieve 2MIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MIB from S2C, [Save to disk]
  • View 2MIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MIB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MIB, from MSDmotif at EBI
  • Genome occurence of 2MIB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2mib__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 2mib from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mib] [2mib_A]
  • SWISS-PROT database: [P10749]
  • Domain organization of [IL1B_MOUSE] by SWISSPFAM
  • Domain found in 2MIB: [IL1 ] by SMART
  • Other resources with information on 2MIB
  • Community annotation for 2MIB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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