2MKI Solution structure of tandem RRM domains of cytoplasmic polyadenylation element binding protein 4 (CPEB4) in complex with RNA date
authors Afroz, T., Skrisovska, L., Belloc, E., Boixet, J.G., Mendez, R., Allain, F.H.T.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA fly trap mechanism provides sequence-specific RNA recognition by CPEB proteins., Afroz T, Skrisovska L, Belloc E, Guillen-Boixet J, Mendez R, Allain FH, Genes Dev. 2014 Jul 1;28(13):1498-514. doi: 10.1101/gad.241133.114. PMID:24990967
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1122 Kb) [Save to disk]
  • Biological Unit Coordinates (2mki.pdb1.gz) 57 Kb
  • CSU: Contacts of Structural Units for 2MKI
  • Original NMR restraints for 2MKI from PDB
  • Retrieve 2MKI in mmCIF format [Save to disk]
  • View 2MKI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MKI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MKI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mki_B] [2mki_A] [2mki]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2MKI: [RRM ] by SMART
  • Other resources with information on 2MKI
  • Community annotation for 2MKI at PDBWiki (http://pdbwiki.org)

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