2MKJ Translation Regulator date Feb 07, 2014
title Solution Structure Of Tandem Rrm Domains Of Cytoplasmic Polyadenylation Element Binding Protein 4 (Cpeb4) In Free S
authors T.Afroz, L.Skrisovska, E.Belloc, J.G.Boixet, R.Mendez, F.H.T.All
compound source
Molecule: Cytoplasmic Polyadenylation Element-Binding Prote
Chain: A
Fragment: Unp Residues 53-254
Synonym: Cpe-Bp4, Cpe-Binding Protein 4, Hcpeb-4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cpeb4, Kiaa1673
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet28a(+)
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA fly trap mechanism provides sequence-specific RNA recognition by CPEB proteins., Afroz T, Skrisovska L, Belloc E, Guillen-Boixet J, Mendez R, Allain FH, Genes Dev. 2014 Jul 1;28(13):1498-514. doi: 10.1101/gad.241133.114. PMID:24990967
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1063 Kb) [Save to disk]
  • Biological Unit Coordinates (2mkj.pdb1.gz) 54 Kb
  • CSU: Contacts of Structural Units for 2MKJ
  • Original NMR restraints for 2MKJ from PDB
  • Retrieve 2MKJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MKJ from S2C, [Save to disk]
  • View 2MKJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MKJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MKJ, from MSDmotif at EBI
  • Fold representative 2mkj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mkj] [2mkj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2MKJ: [RRM ] by SMART
  • Other resources with information on 2MKJ
  • Community annotation for 2MKJ at PDBWiki (http://pdbwiki.org)

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