2MKZ Protein Binding date Feb 17, 2014
title Solution Structure Of A Protein C-Terminal Domain
authors Y.Feng, L.Jiao
compound source
Molecule: Proteasomal Ubiquitin Receptor Adrm1
Chain: A
Fragment: Unp Residues 270-407
Synonym: 110 Kda Cell Membrane Glycoprotein, Gp110, Adhesio Regulating Molecule 1, Arm-1, Proteasome Regulatory Particl Atpase 13, Hrpn13, Rpn13 Homolog;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adrm1, Gp110
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pmcsg7
methodSolution NMR

Primary referenceMechanism of the Rpn13-induced activation of Uch37., Jiao L, Ouyang S, Shaw N, Song G, Feng Y, Niu F, Qiu W, Zhu H, Hung LW, Zuo X, Eleonora Shtykova V, Zhu P, Dong YH, Xu R, Liu ZJ, Protein Cell. 2014 Aug;5(8):616-30. doi: 10.1007/s13238-014-0046-z. Epub 2014 Apr, 22. PMID:24752541
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (690 Kb) [Save to disk]
  • Biological Unit Coordinates (2mkz.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 2MKZ
  • Original NMR restraints for 2MKZ from PDB
  • Retrieve 2MKZ in mmCIF format [Save to disk]
  • View 2MKZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MKZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MKZ, from MSDmotif at EBI
  • Fold representative 2mkz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mkz_A] [2mkz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2MKZ
  • Community annotation for 2MKZ at PDBWiki (http://pdbwiki.org)

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