2MOE Solution structure of MBD4 methyl-cytosine binding domain bound to methylated DNA date
authors Williams, D.C., Walavalkar, N.M.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5CM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and intramolecular exchange of methyl-cytosine binding domain protein 4 (MBD4) on DNA suggests a mechanism to scan for mCpG/TpG mismatches., Walavalkar NM, Cramer JM, Buchwald WA, Scarsdale JN, Williams DC Jr, Nucleic Acids Res. 2014;42(17):11218-32. doi: 10.1093/nar/gku782. Epub 2014 Sep, 2. PMID:25183517
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (592 Kb) [Save to disk]
  • Biological Unit Coordinates (2moe.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2MOE
  • CSU: Contacts of Structural Units for 2MOE
  • Original NMR restraints for 2MOE from PDB
  • Retrieve 2MOE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MOE from S2C, [Save to disk]
  • View 2MOE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MOE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MOE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2moe_A] [2moe] [2moe_C] [2moe_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2MOE: [MBD ] by SMART
  • Other resources with information on 2MOE
  • Community annotation for 2MOE at PDBWiki (http://pdbwiki.org)

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