2MT5 Metal Binding Protein date Aug 13, 2014
title Isolated Ring Domain
authors N.G.Brown, E.R.Watson, F.Weissman, G.Royappa, B.Schulman, M.Jarvi R.Vanderlinden, J.J.Frye, R.Qiao, G.Petzold, J.Peters, H.Stark
compound source
Molecule: Anaphase-Promoting Complex Subunit 11
Chain: A
Fragment: Unp Residues 17-84
Synonym: Apc11, Cyclosome Subunit 11, Hepatocellular Carcin Associated Ring Finger Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc11, Hspc214
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Gst-Fusion With C-Terminal Cys-Hi
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMechanism of Polyubiquitination by Human Anaphase-Promoting Complex: RING Repurposing for Ubiquitin Chain Assembly., Brown NG, Watson ER, Weissmann F, Jarvis MA, VanderLinden R, Grace CR, Frye JJ, Qiao R, Dube P, Petzold G, Cho SE, Alsharif O, Bao J, Davidson IF, Zheng JJ, Nourse A, Kurinov I, Peters JM, Stark H, Schulman BA, Mol Cell. 2014 Oct 8. pii: S1097-2765(14)00716-3. doi:, 10.1016/j.molcel.2014.09.009. PMID:25306923
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (359 Kb) [Save to disk]
  • Biological Unit Coordinates (2mt5.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 2MT5
  • CSU: Contacts of Structural Units for 2MT5
  • Original NMR restraints for 2MT5 from PDB
  • Retrieve 2MT5 in mmCIF format [Save to disk]
  • View 2MT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MT5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MT5, from MSDmotif at EBI
  • Fold representative 2mt5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mt5_A] [2mt5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2MT5: [RING ] by SMART
  • Other resources with information on 2MT5
  • Community annotation for 2MT5 at PDBWiki (http://pdbwiki.org)

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