2MV7 Protein Binding Transferase date Sep 24, 2014
title Solution Nmr Structure Of Dot1l In Complex With Af9 (Dot1l-A
authors A.Kuntimaddi, J.H.Bushweller
compound source
Molecule: Protein Af-9
Chain: A
Fragment: Unp Residues 500-568
Synonym: All1-Fused Gene From Chromosome 9 Protein, Myeloid Or Mixed-Lineage Leukemia Translocated To Chromosome 3 Prot Domain-Containing Protein 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Af9, Mllt3, Yeats3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 De3
Expression_system_vector: Petduet-1
Other_details: Petduet-1

Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-79
Chain: B
Fragment: Unp Residues 877-900
Synonym: Dot1-Like Protein, Histone H3-K79 Methyltransferas Hmtase, Lysine N-Methyltransferase 4;
Ec: 2.1.1.43
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dot1l, Kiaa1814, Kmt4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 De3
Expression_system_vector: Petduet-1
Other_details: Petduet-1
methodSolution NMR
ligand
enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDegree of Recruitment of DOT1L to MLL-AF9 Defines Level of H3K79 Di- and Tri-methylation on Target Genes and Transformation Potential., Kuntimaddi A, Achille NJ, Thorpe J, Lokken AA, Singh R, Hemenway CS, Adli M, Zeleznik-Le NJ, Bushweller JH, Cell Rep. 2015 May 5;11(5):808-20. doi: 10.1016/j.celrep.2015.04.004. Epub 2015, Apr 23. PMID:25921540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (261 Kb) [Save to disk]
  • Biological Unit Coordinates (2mv7.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2MV7
  • Original NMR restraints for 2MV7 from PDB
  • Retrieve 2MV7 in mmCIF format [Save to disk]
  • View 2MV7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MV7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MV7, from MSDmotif at EBI
  • Fold representative 2mv7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mv7_B] [2mv7] [2mv7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2MV7
  • Community annotation for 2MV7 at PDBWiki (http://pdbwiki.org)

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