2N1I Transcription date Apr 02, 2015
title Structure Of The Pr Domain From Prdm16
authors Y.Sun, G.Armstrong, K.Briknarova
compound source
Molecule: Pr Domain Zinc Finger Protein 16
Chain: A
Fragment: Pr Domain (Unp Residues 54-226)
Synonym: Pr Domain-Containing Protein 16, Transcription Fac Mds1evi1-Like Gene 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prdm16, Kiaa1675, Mel1, Pfm13
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Codonplus(De3)-Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest 15
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1014 Kb) [Save to disk]
  • Biological Unit Coordinates (2n1i.pdb1.gz) 51 Kb
  • CSU: Contacts of Structural Units for 2N1I
  • Original NMR restraints for 2N1I from PDB
  • Retrieve 2N1I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N1I from S2C, [Save to disk]
    • View 2N1I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2N1I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2n1i from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n1i_A] [2n1i]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2N1I: [SET ] by SMART
    • Other resources with information on 2N1I
  • Community annotation for 2N1I at PDBWiki (http://pdbwiki.org)

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