2N39 Dna Binding Protein date May 26, 2015
title Nmr Solution Structure Of A C-Terminal Domain Of The Chromod Helicase Dna-Binding Protein 1
authors B.Mohanty, A.P.G.Silva, J.P.Mackay, D.P.Ryan
compound source
Molecule: Chromodomain-Helicase-Dna-Binding Protein 1
Chain: A
Fragment: C-Terminal Domain (Unp Residues 1409-1511)
Synonym: Chd-1, Atp-Dependent Helicase Chd1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Chd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p
methodSolution NMR
Primary referenceThe Chromatin Remodelling Protein CHD1 Contains a Previously Unrecognised C-Terminal Helical Domain., Mohanty B, Helder S, Silva AP, Mackay JP, Ryan DP, J Mol Biol. 2016 Oct 23;428(21):4298-4314. doi: 10.1016/j.jmb.2016.08.028. Epub, 2016 Aug 31. PMID:27591891
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (718 Kb) [Save to disk]
  • Biological Unit Coordinates (2n39.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 2N39
  • Original NMR restraints for 2N39 from PDB
  • Retrieve 2N39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N39 from S2C, [Save to disk]
  • View 2N39 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2N39
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2n39 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n39] [2n39_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2N39: [DUF4208 ] by SMART
  • Other resources with information on 2N39
  • Community annotation for 2N39 at PDBWiki (http://pdbwiki.org)

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